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RETROVIRAL GENE THERAPY FOR THE TREATMENT OF ADA-SCID: LONG-TERM FOLLOW UP AND FIRST CASE OF T-CELL ACUTE LEUKAEMIA DUE TO INSERTIONAL MUTAGENESIS
Author(s): ,
Maria Pia Cicalese §
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Maddalena Migliavacca §
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Daniela Cesana §
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Roberta Caruso
Affiliations:
Department of Onco-Haematology and Cell and Gene Therapy,IRCCS Bambino Gesù Children's Hospital,Rome,Italy
,
Andrea Calabria
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Federica Barzaghi
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Francesca Dionisio
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Stefania Giannelli
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Giulio Spinozzi
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Fabrizio Benedicenti
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Laura Rudilosso
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Andrea Ciolfi
Affiliations:
Genetics and Rare Diseases Research Division,Bambino Gesù Children's Hospital, IRCCS,Rome,Italy
,
Alessandro Bruselles
Affiliations:
Department of Oncology and Molecular Medicine,Istituto Superiore di Sanità,Rome,Italy
,
Simone Pizzi
Affiliations:
Genetics and Rare Diseases Research Division,Bambino Gesù Children's Hospital, IRCCS,Rome,Italy
,
Miriam Casiraghi
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Claudia Fossati
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Stefano Zancan
Affiliations:
Fondazione Telethon,Milan,Italy
,
Michela Gabaldo
Affiliations:
Fondazione Telethon,Milan,Italy
,
Francesca Tucci
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Luisa Strocchio
Affiliations:
Department of Onco-Haematology and Cell and Gene Therapy,IRCCS Bambino Gesù Children's Hospital,Rome,Italy
,
Maria Ester Bernardo
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy;Università Vita-Salute San Raffaele,Milan,Italy
,
Luciana Vinti
Affiliations:
Department of Onco-Haematology and Cell and Gene Therapy,IRCCS Bambino Gesù Children's Hospital,Rome,Italy
,
Francesca Ferrua
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Valeria Calbi
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Vera Gallo
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Filippo Carlucci
Affiliations:
Department of Medical Biotechnologies,University of Siena,Siena,Italy
,
Andrea Guerra
Affiliations:
Orchard Therapeutics,London,United Kingdom
,
Alan Richardson
Affiliations:
Orchard Therapeutics,London,United Kingdom
,
Mahesh Kudari
Affiliations:
Orchard Therapeutics,London,United Kingdom
,
Russell Jones
Affiliations:
Orchard Therapeutics,London,United Kingdom
,
Caterina Cancrini
Affiliations:
Department of Paediatrics,Ospedale Pediatrico Bambino Gesù and University of Rome 'Tor Vergata',Rome,Italy
,
Fabio Ciceri
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Università Vita-Salute San Raffaele,Milan,Italy;Haematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Luigi Naldini
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Università Vita-Salute San Raffaele,Milan,Italy
,
Marco Tartaglia
Affiliations:
Genetics and Rare Diseases Research Division,Bambino Gesù Children's Hospital, IRCCS,Rome,Italy
,
Eugenio Montini
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy
,
Franco Locatelli #
Affiliations:
Department of Onco-Haematology and Cell and Gene Therapy,IRCCS Bambino Gesù Children's Hospital,Rome,Italy;Department of Pediatrics,Sapienza University of Rome,Rome, Italy #Equal contribution; §Equal contribution,Italy
Alessandro Aiuti #
Affiliations:
San Raffaele Telethon Institute for Gene Therapy (SR-Tiget),IRCCS San Raffaele Scientific Institute,Milan,Italy;Paediatric Immunohematology and Bone Marrow Transplantation Unit,IRCCS San Raffaele Scientific Institute,Milan,Italy;Università Vita-Salute San Raffaele,Milan,Italy
EHA Library. Pia Cicalese M. 06/09/21; 324666; S258
Maria Pia Cicalese
Maria Pia Cicalese
Contributions
Abstract
Presentation during EHA2021: All Oral presentations will be made available as of Friday, June 11, 2021 (09:00 CEST) and will be accessible for on-demand viewing until August 15, 2021 on the Virtual Congress platform.

Abstract: S258

Type: Oral Presentation

Session title: Cellular immunotherapy and gene therapy - Clinical

Background

Haematopoietic stem cell (HSC) gene therapy (GT) using a γ-retroviral vector (γ-RV) (Strimvelis ®) has been authorised in the EU for the treatment of Severe Combined Immunodeficiency due to Adenosine Deaminase deficiency (ADA-SCID) in patients with no suitable human leukocyte antigen (HLA)-matched related HSC donor.

Aims
We summarise our experience with ADA-SCID γ-RV GT during clinical development and post-marketing and report the occurrence of the first case of T-cell acute lymphoblastic leukaemia (T-ALL) after GT.

Methods
Since 2000, 40 patients have been infused with autologous CD34+ cells engineered with a γ-RV encoding ADA following low dose busulfan. Patients were monitored long-term with annual visits. Eighteen patients were treated within the Clinical Development Program, 4 in a Named Patient Program (NPP), and 16 with the commercial product. Two patients were treated under Hospital Exemption with mobilised CD34+ peripheral blood cells, instead of bone marrow derived used for Strimvelis. Efficacy was evaluated in the first 36 patients with a sufficient follow-up (FU) up to March 5, 2020; serious adverse events were reported on the entire cohort until November 30, 2020.

Results
All evaluable patients are alive with a median FU of 7.2 years (range 0.3-19.2) with an intervention-free survival of 83.3% (30/36). Of the 6 patients in whom GT failed, 4 underwent allogeneic HSCT and 2 were on long-term enzyme replacement therapy. In all 30 patients with successful outcomes, engraftment of gene corrected cells persisted long-term in multiple haematopoietic lineages, at higher levels in lymphocytes. ADA activity in mononuclear cells was sustained in most patients with adequate systemic detoxification. Immune reconstitution was accompanied in most patients by increased immunoglobulin production, decreased Ig use and antibody response to vaccines. Long-term FU data revealed a decreased rate of severe infections after treatment. Most adverse events were related to disease background, conditioning or immune reconstitution. A drug-related event recently emerged in an NPP patient of 5.75 years of age, who developed T-ALL 4.7 years after GT. Routine FU 3 months earlier did not reveal abnormalities and a polyclonal insertion site profile was present at 1, 1.5 and 3 years post-GT. Clinical onset consisted of haemorrhagic diathesis and weakness. Blood tests showed WBC 291.300/uL and immature lymphocytes (93%) with phenotype CD7+, CD34het, CD2+, CD56-, CD4-, CD8dim, sCD3dim/neg, cyCD3+. There was no CNS or mediastinal involvement. The blast population was transduced (1.18 VCN/genome) and expressed low ADA activity. Integration site analysis identified a single highly dominant clone harboring a vector integration ~40kb upstream the LMO2 gene, which was overexpressed by RT-PCR. Retrospectively, the insertion was found in mature peripheral blood CD4+ T cells at 1 year (7%), stable over time. Whole genome analyses in blasts revealed loss of a large part of chr. 6 and two large LOH regions on chr. 9. The patient showed poor prednisone response, while morphological complete remission was obtained at the end of induction therapy of the AIEOP-BFM ALL 2017 protocol. Further studies are ongoing to better characterize the factors contributing to leukaemogenesis in this patient.

Conclusion
Efficacy of γ-RV-GT in ADA-SCID is sustained with a FU up to 19.2 years. Due to the identified risk of leukaemogenesis, patients will continue long-term FU to closely monitor the safety of the product. EMA CHMP confirmed that the risk/benefit balance remains favorable for Strimvelis in its approved indication.

Keyword(s): Gene therapy, Immunodeficiency, Lymphoid malignancy, Retroviral vector

Presentation during EHA2021: All Oral presentations will be made available as of Friday, June 11, 2021 (09:00 CEST) and will be accessible for on-demand viewing until August 15, 2021 on the Virtual Congress platform.

Abstract: S258

Type: Oral Presentation

Session title: Cellular immunotherapy and gene therapy - Clinical

Background

Haematopoietic stem cell (HSC) gene therapy (GT) using a γ-retroviral vector (γ-RV) (Strimvelis ®) has been authorised in the EU for the treatment of Severe Combined Immunodeficiency due to Adenosine Deaminase deficiency (ADA-SCID) in patients with no suitable human leukocyte antigen (HLA)-matched related HSC donor.

Aims
We summarise our experience with ADA-SCID γ-RV GT during clinical development and post-marketing and report the occurrence of the first case of T-cell acute lymphoblastic leukaemia (T-ALL) after GT.

Methods
Since 2000, 40 patients have been infused with autologous CD34+ cells engineered with a γ-RV encoding ADA following low dose busulfan. Patients were monitored long-term with annual visits. Eighteen patients were treated within the Clinical Development Program, 4 in a Named Patient Program (NPP), and 16 with the commercial product. Two patients were treated under Hospital Exemption with mobilised CD34+ peripheral blood cells, instead of bone marrow derived used for Strimvelis. Efficacy was evaluated in the first 36 patients with a sufficient follow-up (FU) up to March 5, 2020; serious adverse events were reported on the entire cohort until November 30, 2020.

Results
All evaluable patients are alive with a median FU of 7.2 years (range 0.3-19.2) with an intervention-free survival of 83.3% (30/36). Of the 6 patients in whom GT failed, 4 underwent allogeneic HSCT and 2 were on long-term enzyme replacement therapy. In all 30 patients with successful outcomes, engraftment of gene corrected cells persisted long-term in multiple haematopoietic lineages, at higher levels in lymphocytes. ADA activity in mononuclear cells was sustained in most patients with adequate systemic detoxification. Immune reconstitution was accompanied in most patients by increased immunoglobulin production, decreased Ig use and antibody response to vaccines. Long-term FU data revealed a decreased rate of severe infections after treatment. Most adverse events were related to disease background, conditioning or immune reconstitution. A drug-related event recently emerged in an NPP patient of 5.75 years of age, who developed T-ALL 4.7 years after GT. Routine FU 3 months earlier did not reveal abnormalities and a polyclonal insertion site profile was present at 1, 1.5 and 3 years post-GT. Clinical onset consisted of haemorrhagic diathesis and weakness. Blood tests showed WBC 291.300/uL and immature lymphocytes (93%) with phenotype CD7+, CD34het, CD2+, CD56-, CD4-, CD8dim, sCD3dim/neg, cyCD3+. There was no CNS or mediastinal involvement. The blast population was transduced (1.18 VCN/genome) and expressed low ADA activity. Integration site analysis identified a single highly dominant clone harboring a vector integration ~40kb upstream the LMO2 gene, which was overexpressed by RT-PCR. Retrospectively, the insertion was found in mature peripheral blood CD4+ T cells at 1 year (7%), stable over time. Whole genome analyses in blasts revealed loss of a large part of chr. 6 and two large LOH regions on chr. 9. The patient showed poor prednisone response, while morphological complete remission was obtained at the end of induction therapy of the AIEOP-BFM ALL 2017 protocol. Further studies are ongoing to better characterize the factors contributing to leukaemogenesis in this patient.

Conclusion
Efficacy of γ-RV-GT in ADA-SCID is sustained with a FU up to 19.2 years. Due to the identified risk of leukaemogenesis, patients will continue long-term FU to closely monitor the safety of the product. EMA CHMP confirmed that the risk/benefit balance remains favorable for Strimvelis in its approved indication.

Keyword(s): Gene therapy, Immunodeficiency, Lymphoid malignancy, Retroviral vector

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