EHA Library - The official digital education library of European Hematology Association (EHA)

TO INFINITY AND BEYOND: NGS IN MDS
Author(s): ,
André Barbosa Ribeiro
Affiliations:
Department of Clinical Hematology,Centro Hospitalar e Universitário de Coimbra,Coimbra,Portugal;Centre of Investigation in Environment, Genetics and Oncobiology - CIMAGO,Faculty of Medicine, University of Coimbra,Coimbra,Portugal;Applied Molecular Biology and University Clinic of Hematology,Faculty of Medicine, University of Coimbra,Coimbra,Portugal
,
Rita Tenreiro
Affiliations:
Department of Clinical Hematology,Centro Hospitalar e Universitário de Coimbra,Coimbra,Portugal
,
Margarida Coucelo
Affiliations:
Department of Clinical Hematology,Centro Hospitalar e Universitário de Coimbra,Coimbra,Portugal
,
Ana Teresa Simões
Affiliations:
Department of Clinical Hematology,Centro Hospitalar e Universitário de Coimbra,Coimbra,Portugal
,
Sandra Marini
Affiliations:
Department of Clinical Hematology,Centro Hospitalar e Universitário de Coimbra,Coimbra,Portugal
,
Leticia Ribeiro
Affiliations:
Department of Clinical Hematology,Centro Hospitalar e Universitário de Coimbra,Coimbra,Portugal
,
Emília Cortesão
Affiliations:
Department of Clinical Hematology,Centro Hospitalar e Universitário de Coimbra,Coimbra,Portugal;Centre of Investigation in Environment, Genetics and Oncobiology - CIMAGO,Faculty of Medicine, University of Coimbra,Coimbra,Portugal;Applied Molecular Biology and University Clinic of Hematology,Faculty of Medicine, University of Coimbra,Coimbra,Portugal
Ana Bela Sarmento Ribeiro
Affiliations:
Department of Clinical Hematology,Centro Hospitalar e Universitário de Coimbra,Coimbra,Portugal;Centre of Investigation in Environment, Genetics and Oncobiology - CIMAGO,Faculty of Medicine, University of Coimbra,Coimbra,Portugal;Applied Molecular Biology and University Clinic of Hematology,Faculty of Medicine, University of Coimbra,Coimbra,Portugal;CNC.IBILI,University of Coimbra,Coimbra,Portugal
(Abstract release date: 05/18/17) EHA Library. Barbosa Ribeiro A. 05/18/17; 182643; PB1929
André Barbosa Ribeiro
André Barbosa Ribeiro
Contributions
Abstract

Abstract: PB1929

Type: Publication Only

Background
Myelodysplastic syndrome (MDS) constitutes a heterogeneous group of hematopoietic stem cell disorders, characterized by peripheral blood cytopenias in the presence of a dysplastic and hypercellular bone marrow. This biological heterogeneity is reflected in the clinical course, ranging from an indolent disease to entities with high risk of progression to AML and dismal prognosis.

Genetic and epigenetic abnormalities are at the core of myeloid neoplasias development and despite the degree of dysplasia and blast percentages still being the main features for the WHO classification, a large amount of data has recently become available on recurring mutations in MDS, mainly due to massive parallel sequencing techniques.

Aims
Our aim was to search for genetic mutations in a cohort of patients with MDS.

Methods
We studied a total of 33 patients diagnosed with de novo MDS (WHO 2008 classification), using a Next Generation Sequencing panel comprising 45 myeloid genes.

Results
Patients were 15 male and 18 female, with a median age at diagnosis of 76 years (52 – 93 years). The MDS subtypes distribution was 16 patients (48,5%) with RCMD, 4 patients with RARS, 4 with RAEB -1 and 4 with RAEB-2 (12,1% for each subtype), 3 patients (9,1%) with 5q-Syndrome and 2 patients (6,1%) with RCUD. These patients were stratified according to the IPSS as Low-risk (24,2%), Int-1 (33,3%) and Int-2 (18,2%), without any high-risk patients. All patients required erythropoiesis stimulating agents and 9 patients received treatment with azacytidine (AZA), including all the Int-2 patients and 3 lower risk patients who progressed to a higher risk MDS. Estimated cumulative survival at 46 months was 67% with a median OS not reached and median follow-up time of 34 months. Patients receiving AZA revealed a trend towards survival benefit (mean survival 54,2 vs 50 months), independent of IPSS and R-IPSS, but not statistically significant.

Mutational analysis revealed that 75,8% of patients had at least one gene mutation and it was most frequently related to DNA methylation genes (n = 14), particularly in TET2 (n=7 patients) and DNMT3A (n=6 patients, 7 different mutations) genes. We found a statistically significant difference between mutations in these genes and lower absolute neutrophil counts (mean 2,42 ± 0,47 G/L vs 1,33 ± 0,18 G/L; p = 0,42).
The second most frequently mutated genes were related to signal transduction pathways (n = 11; JAK1, JAK2, NRAS, CBL, GATA2, SH2B3, CSFR). Patients with these mutations had significantly lower serum EPO levels (p < 0,001; median 32,35 vs 42,70 U/L). Furthermore, patients with such mutations demonstrated a clear disadvantage in survival analysis, with a median OS of 19 months vs not reached in patients without mutations (p< 0,001), being these results independent of the IPSS and R-IPSS risk groups.
We were also able to identify a trend towards worst survival in patients with previously described high risk mutations (TP53, EZH2, ASXL1, RUNX1 and ETV6 genes).

Conclusion
We conclude that the most frequently detected mutations were related to DNA methylation genes, as described in the literature, which was independent of the IPSS risk group, being observed in both low-risk and high-risk patients. These results raise the question whether hypomethylating agents may also be of benefit for lower-risk patients.

We also observed a high frequency of mutations in signal transduction pathways which was related to a clear survival disadvantage across all risk groups of the IPSS and R-IPSS. This unveils the question whether we may be facing a shift towards the molecular level in MDS risk stratification and if therapies targeted to such molecules may improve the outcome of these patients.

Session topic: 10. Myelodysplastic syndromes - Clinical

Keyword(s): Signal transduction, mutation analysis, Methylation, MDS

Abstract: PB1929

Type: Publication Only

Background
Myelodysplastic syndrome (MDS) constitutes a heterogeneous group of hematopoietic stem cell disorders, characterized by peripheral blood cytopenias in the presence of a dysplastic and hypercellular bone marrow. This biological heterogeneity is reflected in the clinical course, ranging from an indolent disease to entities with high risk of progression to AML and dismal prognosis.

Genetic and epigenetic abnormalities are at the core of myeloid neoplasias development and despite the degree of dysplasia and blast percentages still being the main features for the WHO classification, a large amount of data has recently become available on recurring mutations in MDS, mainly due to massive parallel sequencing techniques.

Aims
Our aim was to search for genetic mutations in a cohort of patients with MDS.

Methods
We studied a total of 33 patients diagnosed with de novo MDS (WHO 2008 classification), using a Next Generation Sequencing panel comprising 45 myeloid genes.

Results
Patients were 15 male and 18 female, with a median age at diagnosis of 76 years (52 – 93 years). The MDS subtypes distribution was 16 patients (48,5%) with RCMD, 4 patients with RARS, 4 with RAEB -1 and 4 with RAEB-2 (12,1% for each subtype), 3 patients (9,1%) with 5q-Syndrome and 2 patients (6,1%) with RCUD. These patients were stratified according to the IPSS as Low-risk (24,2%), Int-1 (33,3%) and Int-2 (18,2%), without any high-risk patients. All patients required erythropoiesis stimulating agents and 9 patients received treatment with azacytidine (AZA), including all the Int-2 patients and 3 lower risk patients who progressed to a higher risk MDS. Estimated cumulative survival at 46 months was 67% with a median OS not reached and median follow-up time of 34 months. Patients receiving AZA revealed a trend towards survival benefit (mean survival 54,2 vs 50 months), independent of IPSS and R-IPSS, but not statistically significant.

Mutational analysis revealed that 75,8% of patients had at least one gene mutation and it was most frequently related to DNA methylation genes (n = 14), particularly in TET2 (n=7 patients) and DNMT3A (n=6 patients, 7 different mutations) genes. We found a statistically significant difference between mutations in these genes and lower absolute neutrophil counts (mean 2,42 ± 0,47 G/L vs 1,33 ± 0,18 G/L; p = 0,42).
The second most frequently mutated genes were related to signal transduction pathways (n = 11; JAK1, JAK2, NRAS, CBL, GATA2, SH2B3, CSFR). Patients with these mutations had significantly lower serum EPO levels (p < 0,001; median 32,35 vs 42,70 U/L). Furthermore, patients with such mutations demonstrated a clear disadvantage in survival analysis, with a median OS of 19 months vs not reached in patients without mutations (p< 0,001), being these results independent of the IPSS and R-IPSS risk groups.
We were also able to identify a trend towards worst survival in patients with previously described high risk mutations (TP53, EZH2, ASXL1, RUNX1 and ETV6 genes).

Conclusion
We conclude that the most frequently detected mutations were related to DNA methylation genes, as described in the literature, which was independent of the IPSS risk group, being observed in both low-risk and high-risk patients. These results raise the question whether hypomethylating agents may also be of benefit for lower-risk patients.

We also observed a high frequency of mutations in signal transduction pathways which was related to a clear survival disadvantage across all risk groups of the IPSS and R-IPSS. This unveils the question whether we may be facing a shift towards the molecular level in MDS risk stratification and if therapies targeted to such molecules may improve the outcome of these patients.

Session topic: 10. Myelodysplastic syndromes - Clinical

Keyword(s): Signal transduction, mutation analysis, Methylation, MDS

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